Section: Dissemination

Teaching - Supervision - Juries

• Master Bibs : J. Bernauer, Informatique théorique et Programmation Python, 20h, M2, Université Paris-Sud, France

• Master Bibs : M. Régnier and J.-M. Steyaert, Combinatoire, Algorithmes, Séquences et Modélisation (Casm ), 32h, M2, Université Paris-Sud, France

• Master : M. Régnier, Basic Algorithms in Computational Biology, 4h, M2, Mipt , Russia.

• Cycle Ingénieur Polytechnicien: M. Régnier, Modal Bioinformatique, 8h, 2ème année, École Polytechnique, France

• PhD

  • Adrien Guilhot-Gaudeffroy (co-supervised by Ch. Froidevaux, and J. Bernauer, Amib and J. Azé Lirmm ) has defended his PhD thesis (29/09/2014) https://hal.archives-ouvertes.fr/tel-01081605

• PhD in progress

  • Mélanie Boudard, Game theory and stochastic learning for predicting the three-dimensional structure of large RNA molecules, Univ. Paris XI, Encadrant(e|s): D. Barth (Univ. Versailles), J. Cohen (CNRS, LRI) and A. Denise.

  • Bryan Brancotte, Ranking biological and biomedical data: algorithms and applications, Université Paris Sud, 01/10/2012, Encadrants: S. Cohen-Boulakia and A. Denise.

  • Alice Heliou, Identification et caractérisation d'ARN circulaires dans des séquences NGS, Ecole Polytechnique, Encadrants: Mireille Régnier et H. Becker

  • Amélie Heliou, Game theory and conformation sampling for multi-scale and multi-body macromolecule docking , Ecole Polytechnique, Encadrantes: J. Bernauer and J. Cohen

  • Daria Iakovishina, A Combinatorial Approach to Assembly Algorithm, Inria, Encadrante: Mireille Régnier

  • Vincent Le Gallic, Design de structures secondaires avec contraintes de séquences : une approche globale fondée sur les langages formels, Univ. Paris Sud. Encadrants: A. Denise and Y. Ponty

  • Cécile Pereira, Nouvelles approches bioinformatiques pour l'étude à grande échelle de l'évolution des activités enzymatiques, Univ. Paris XI, Encadrants: Olivier Lespinet and Alain Denise

  • Adrien Rougny, Reasonings on biological knowledge to build and analyze signalling networks, Univ. Paris Sud. Encadrante: Ch. Froidevaux

  • Antoine Soulé, Evolutionary study of RNA-RNA interactions in yeast, Ecole Polytechnique, Encadrants: J.-M. Steyaert and J. Waldispuhl (University McGill, Canada).

• Expertise

  • S. Cohen-Boulakia acted as an external expert in the ERC Consolidator Grant, panel ’Computer Science and Informatics’

  • Y. Ponty is a member of the `Comité National' (hiring/evaluation committee) of Cnrs in computer science (section 6) and bioinformatics (cid 51); he acted as an external expert for the Emergence program of Ville de Paris, and for the JCJC program of ANR.

  • M. Régnier was a member of PES/PEDR attribution juries for Inria and CNRS . She is a member of Digiteo progam Committee and SDV working group in Saclay area. She acted as an external expert for regional initiatives.

  • A. Denise was a member of the HCERES evaluation committee of Inra Miat Unit.

• Hiring committees

  • Maitre de conferences, Paris Sud, 2014 Computer Science department: Sarah Cohen-Boulakia, Sabine Peres, Christine Froidevaux;

  • Professeur, Bordeaux, 2014, Computer Science department: Alain Denise;

  • CR2, Inria-Idf : M. Régnier;

  • CR2, Inria-Rennes : M. Régnier;

• PhD juries

  • M. Folschette (Nantes U.) : M. Régnier;

  • N. Obeid (Toulouse U.): Ch. Froidevaux;

  • S. Videla (Rennes U.): Ch. Froidevaux;

  • R. Champeimont (Pierre et Marie Curie U.): A. Denise;

  • D. Symeonidou (Paris-Sud U.): A. Denise;

  • A. Jacquot (Paris-Nord U.): A. Denise;

• HDR juries

  • Ch. Sinocquet (Nantes U.): Ch. Froidevaux

  • M. Smail (Nancy U.): Ch. Froidevaux

  • P. Amar (Paris-Sud U.) : A. Denise

  • A. Allauzen (Paris-Sud U.) : A. Denise

  • F. Tahi (Evry U.) : M. Régnier;

  • J. Bernauer (Paris-Sud U.) : Ch. Froidevaux, J.-M. Steyaert